pyalma.anndatareader

module documentation

Undocumented

Function read_adata Reads an AnnData object from an H5AD file using Scanpy.
def read_adata(path): ΒΆ

Reads an AnnData object from an H5AD file using Scanpy.

:param path: Path to the `.h5ad` file. :type path: str :return: The loaded AnnData object. :rtype: anndata.AnnData

:Example:

>>> adata = read_adata("dataset.h5ad")
>>> print(adata.shape)  # e.g., (10000, 2000)

:Notes:

  • If you want to access data without loading it all into memory, consider using ``backed='r'`` with ``sc.read_h5ad(path, backed='r')``.
  • AnnData is a popular format for storing single-cell data.