A

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• anndatareader - pyalma.anndatareader

C

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• clean_on_destruction - pyalma.fileReader.FileReader.clean_on_destruction
• clean_tmp_files - pyalma.fileReader.FileReader.clean_tmp_files
• clean_tmp_files 0 - pyalma.fileReader.FileReader.clean_tmp_files 0
• cli - pyalma.cli

D

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• decode_content_by_type - pyalma.fileReader.FileReader.decode_content_by_type
• download_remote_file
  • pyalma.fileReader.FileReader.download_remote_file
  • pyalma.ssh.SshClient.download_remote_file

F

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• FileReader - pyalma.fileReader.FileReader
• fileReader - pyalma.fileReader
• files_to_clean - pyalma.fileReader.FileReader.files_to_clean
• filter_file - pyalma.ssh.SshClient.filter_file
• filter_output - pyalma.ssh.SshClient.filter_output
• filtered_patterns - pyalma.ssh.SshClient.filtered_patterns

G

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• get_doc - pyalma.pdfreader.get_doc
• get_file_extension - pyalma.fileReader.FileReader.get_file_extension
• get_file_size
  • pyalma.fileReader.FileReader.get_file_size
  • pyalma.ssh.SshClient.get_file_size
• get_local_file_size - pyalma.local.LocalFileReader.get_local_file_size

I

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• imageReader - pyalma.imageReader
• is_remote - pyalma.fileReader.FileReader.is_remote
• isfile
  • pyalma.fileReader.FileReader.isfile
  • pyalma.ssh.SshClient.isfile

L

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• listdir
  • pyalma.fileReader.FileReader.listdir
  • pyalma.local.LocalFileReader.listdir
  • pyalma.ssh.SshClient.listdir
• load_h5ad_file
  • pyalma.fileReader.FileReader.load_h5ad_file
  • pyalma.ssh.SshClient.load_h5ad_file
• local - pyalma.local
• LocalFileReader - pyalma.local.LocalFileReader

M

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• main - pyalma.cli.main

P

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• password - pyalma.ssh.SshClient.password
• pdfreader - pyalma.pdfreader
• port - pyalma.ssh.SshClient.port
• pyalma - pyalma

R

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• read_adata - pyalma.anndatareader.read_adata
• read_file - pyalma.fileReader.FileReader.read_file
• read_file_into_df - pyalma.fileReader.FileReader.read_file_into_df
• read_h5ad - pyalma.fileReader.FileReader.read_h5ad
• read_image - pyalma.imageReader.read_image
• read_pdf_as_text - pyalma.pdfreader.read_pdf_as_text
• read_pdf_to_dataframe - pyalma.pdfreader.read_pdf_to_dataframe
• read_vcf_file_into_df - pyalma.fileReader.FileReader.read_vcf_file_into_df
• remote
  • pyalma.fileReader.FileReader.remote
  • pyalma.ssh.SshClient.remote
• run_cmd
  • pyalma.local.LocalFileReader.run_cmd
  • pyalma.ssh.SshClient.run_cmd

S

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• server - pyalma.ssh.SshClient.server
• set_clean_on_dest - pyalma.fileReader.FileReader.set_clean_on_dest
• sftp - pyalma.ssh.SshClient.sftp
• sftp_client - pyalma.ssh.SshClient.sftp_client
• sftp_ssh_client - pyalma.ssh.SshClient.sftp_ssh_client
• ssh - pyalma.ssh
• ssh_client - pyalma.ssh.SshClient.ssh_client
• SshClient - pyalma.ssh.SshClient

U

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• username - pyalma.ssh.SshClient.username

W

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• write_to_remote_file
  • pyalma.fileReader.FileReader.write_to_remote_file
  • pyalma.ssh.SshClient.write_to_remote_file

_

A - C - D - F - G - I - L - M - P - R - S - U - W - _

• __del__
  • pyalma.fileReader.FileReader.__del__
  • pyalma.ssh.SshClient.__del__
• __init__
  • pyalma.fileReader.FileReader.__init__
  • pyalma.local.LocalFileReader.__init__
  • pyalma.ssh.SshClient.__init__
• __version__ - pyalma.__version__
• _connect - pyalma.ssh.SshClient._connect
• _create_ssh_client - pyalma.ssh.SshClient._create_ssh_client
• _is_auto_dataframe_type - pyalma.fileReader.FileReader._is_auto_dataframe_type
• _is_binary_type - pyalma.fileReader.FileReader._is_binary_type
• _is_text_type - pyalma.fileReader.FileReader._is_text_type
• _load_filtered_patterns - pyalma.ssh.SshClient._load_filtered_patterns
• _read_file_content
  • pyalma.local.LocalFileReader._read_file_content
  • pyalma.ssh.SshClient._read_file_content
• _read_vcf_as_dataframe
  • pyalma.local.LocalFileReader._read_vcf_as_dataframe
  • pyalma.ssh.SshClient._read_vcf_as_dataframe