Publications and Acknowledgements from the Group
Publications
- Abstract B004: PISCA-box: A user-friendly interface for Phylogenetic Inference using Somatic Chromosomal Alterations (PISCA) - Rachel Alcraft is the abstract co-author.
Acknowledgements
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The transcriptomic architecture of common cancers reflects synthetic lethal interactions - Rachel Alcraft supported a development of the SYLVER's web app (link to Acknowledgements).
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Convergent TP53 loss and evolvability in cancer - Rachel Alcraft together with ex ICR RSE Kareem Marzouk developed a data visualisation tool to create a TP53 mutation profile figure (link to Acknowledgements).
Guidance on acknowledging the RSE team
The RSE group at the ICR has been involved in a number of publications - we are proud to have contributed to these works, showcasing the impact of software engineering in cancer research. We on the RSE team also acknowledge the work of all our colleagues in the ICR, particularly our sister team in Scientific Computing, the SC Insfrastructure team, without whom the results on linux machines and HPC infrastructure would not be possible.
If you are considering whether to give the RSE team authorship or acknowledgements, possible guidance is here Academic Authorship Guidelines.
An RSE focused interpretation of this guidance is that RSEs should be given authorship if a publication would not have been possible without them. See the guidance for RSEs at Princeton.
Where an acknowledgement is given, we would appreciate the inclusion of the team's DOI, e.g.:
We acknowledge the RSE Group at The Institute of Cancer Research for providing software development and training. Their support was instrumental in achieving the results presented in this paper. https://doi.org/10.5281/zenodo.10638989. In particular [insert names of RSEs who contributed].
